Daniel Zenklusen

Regulating gene expression, the process of reading and interpreting genetic information is a central task for all living organisms, and errors in this process cause many diseases, including cancer and various neurodegenerative diseases. We seek to understand the processes that modulate regulated expression of genes in cells by investigating the spatio-temporal regulation of RNA metabolism, focusing on studying the biology of the main molecule within this process, RNA. Combining single-molecule and super-resolution microscopy approaches with biochemistry, genomics and genetics we aim to gain a better understanding of the general rules that governing RNA metabolism, establishing the basis for a better understanding of cell physiology and treatment of complex diseases. Among our current research projects, we investigate how the organization and composition of (pre-)mRNP and lncRNP modulate their function, how the structural organization of the nucleus in different phase separated compartment contributes to the regulation of RNA expression, and how the nuclear pore complex regulates the RNA transport to the cytoplasm. 

Daniel Zenklusen est titulaire d'un doctorat en microbiologie de l'Université de Lausanne et a effectué des études postdoctorales dans le laboratoire de Robert H Singer à l'Albert Einstein College of Medicine à New York. Il est professeur au Département de biochimie et médecine moléculaire de la Faculté de médecine de l'UdeM depuis 2010.

• Zenklusen Lab
• 08-11-2018 Nous savons maintenant comment les molécules d’ARN s’organisent dans les cellules

Dernières publications

1. Bensidoun P, Reiter T, Montpetit B, Zenklusen D#, Oeffinger M#. Nuclear mRNA metabolism drives selective basket assembly on a subset of nuclear pores in budding yeast. Molecular Cell 2022 Oct 20;82(20):3856-3871.e6. #co-corresponding authors

2.  Zhao C, Biondic S, Vandal K, Björklund ÅK, Hagemann-Jensen M, Sommer TM, Canizo J, Clark S, Raymond P, Zenklusen D, Rivron N, Reik W, Petropoulos S. Single-cell multi-omics of human preimplantation embryos shows susceptibility to glucocorticoids. Genome Research 2022 Aug 10;32(9):1627-41.

3. Jayabalan AK, Adivarahan S, Koppula A, Abraham R, Batish M, Zenklusen D,  Griffin DE and  Leung AKL. Stress granule formation, disassembly, and composition are regulated by alphavirus ADP-ribosylhydrolase activity. Proc Natl Acad Sci U S A, 2021 118 (6) e2021719118

4. Adivarahan S, Livingston N, Nicholson B, Rahman S, Wu B, Rissland O, Zenklusen D. Spatial organization of single mRNPs at different stages of the gene expression pathway. Molecular Cell. 08 Nov 2018, 72(4):727-738.e5

5. Lessard F, Igelmann S, Huot G, Le Calvé B, Montero B, St-Germain E, Mignacca L, Deschênes-Simard X, Moiseeva O, Zorca CE, Zenklusen D, Brakier-Gingras L, Bourdeau V and Ferbeyre G. Defective ribosome biogenesis in senescence reveals a novel checkpoint pathway to block cyclin dependent kinases. Nature Cell Biology. Jul;20(7):789-799

6. Rahman S, Zorca C, Traboulsi T, Noutahi E, Krause M, Mader S and Zenklusen D. Single-cell profiling reveals that eRNA accumulation at enhancer-promoter loops is not required to sustain transcription. Nucleic Acid Research. 2017 Apr 7;45(6):3017-3030. 

7. Fernandez-Martinez J, Kim SJ, Shi Y, Upla P, Pellarin R, Gagnon M, Chemmama IE, Wang J, Nudelman I, Zhang W, Williams R, Rice WJ, Stokes DL, Zenklusen D, Chait BT, Sali A, Rout MP. Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform. Cell 2016 Nov 17;167(5):1215-1228.e25 

8. Saroufim MA, Bensidoun P, Raymond P, Rahman S, Krause MR, Oeffinger M, Zenklusen D. The nuclear basket mediates perinuclear mRNA scanning in budding yeast. Journal of Cell Biology 2015 Dec 21;211(6):1131-40 

9. Castelnuovo M, Rahman S, Guffanti E, Infantino V, Stutz F and Zenklusen D. Single cell analysis reveals aspects of antisense RNA regulation and mode of action in PHO84 transcription repression. Nat Struct Mol Biol. 2013 Jul;20(7):851-8.
10. Hocine S, Raymond P, Zenklusen D, Chao JA and Singer RH. Single-molecule analysis of gene expression using two-color RNA labeling in live yeast.  Nature Methods  2013 Feb;10(2):119-21.

Pour consulter la liste complète des publications