Chroniques Biochimiques

 

Nous sommes fières de lancer les Chroniques Biochimiques, une infolettre web du Département de biochimie et médecine moléculaire. Ces chroniques, publiées 2 fois par année, seront à la fois des nouvelles de notre communauté de biochimistes, de bio-informaticiens et de biochimistes cliniques selon un ordre chronologique, des articles consacrés à des domaines chauds de l’actualité ou encore des annonces utiles (événements à venir, offres de stage, d’emploi, etc). Ainsi nos chroniques biochimiques parleront des événements marquants dans notre communauté, de projets actuels et de visions futures.

Abonnez-vous aux chroniques biochimiques, c’est facile! Faites-nous parvenir votre adresse courriel!

 

Édition 2 – Juin 2017

Visites des cégeps et accueil au département

Professeurs, employés et étudiants ayant offert généreusement de leur temps pour transmettre leur passion lors des visites dans les cégeps et quand ceux-ci sont venus faire un petit tour par chez nous!

Professeurs

Luc DesGroseillers
Gerardo Ferbeyre
Nathalie Grandvaux
Nikolaus Heveker
James G. Omichinski
Adrian Serohijos

Étudiants

Myriam Gagné
Christina Gagnon
Sami Hsine
Mathieu Lussier-Price
Marie-Camille Rowell
Olivier Tastet

Employés
Louise Cournoyer
Philipe Lampron
Audrey Noël
Marie Pageau
Sébastien Truche
Monique Vasseur

Liste d'honneur de la doyenne de la Faculté de médecine - 2017

Liste d’honneur de la doyenne de la Faculté de médecine

D’Eramo, Jesse
Dominique, Guypson
Mars, Joberthe
Pham, Laurianne
Régazzoni, Anne

Bourses - Lauréats 2017

Bourses Excellence Recherche Gérées par BMM

Laurie Chevalier, laboratoire de Luc DesGroseillers,
Christopher Savoie, laboratoire d’Adrian Serohijos
Antoine Vallette-Viallard, laboratoire d’Elitza Tocheva

Bourses de stagiaires d’été du CRSNG

Mathieu Bouthillette, laboratoire de Luc DesGroseillers
Alexandre Laliberté, laboratoire de Christian Baron
Annick Lanteigne, laboratoire de Elitza Tocheva
Camille Rochefort-Boulanger, laboratoire de Marie-Pierre Dubé
Élise Rouleau-Turcotte, laboratoire de John Pascal
Vithuya Shanmugalingam, laboratoire de Sebastian Pechmann
Youssef Stanom, laboratoire de Gerardo Ferbeyre

Financement/Subventions

Fondation canadienne de l’innovation

Adrian Serohijos, FCI-leader. Integrating biophysics and population genetics to predict drug resistance and develop novel tools in molecular evolution

Chaire de recherche du Canada

Sebastian Pechmann en biologie computationnelle des systèmes.

Bourse de chercheur-boursier Junior 2 du FRQ-S

Daniel Zenklusen, Disséquer les mécanismes régulant l’expression des gènes en utilisant des approches de molécules uniques.

Subventions

Michel Bouvier, IRSC volet Fondation. Assembly, trafficking and functional selectivity of G protein-coupled receptors; from molecular mechanisms to therapeutic discovery

John Pascal, IRSC Projet. Structural Biology of Tankyrase Activity and Regulation in Cell Signaling

Gerardo Ferbeyre, IRSC Projet. Mechanisms of ERK-dependent tumor suppression

Marlene Oeffinger, IRSC Projet. Determining the pathways, components and functional niches that define specialized ribosomes.

Vincent Archambault, IRSC Projet. Mechanisms Coordinating Polo Kinase Activity and Localization in Cell Division

Sylvie Mader, IRSC Projet. Mechanisms controlling estrogen receptor alpha expression and activity in breast tumorigenesis

Christian Baron, CRSNG Subvention à la découverte

Christian Baron, Génome Canada (avec l’Université de Toronto)

Franz Lang, CRSNG Subvention à la découverte. Ribosomal hopping in yeast.

Eric Lécuyer, CRSNG Subvention à la découverte. DNA damage signaling and transcriptome regulation in Drosophila embryogenesis

James Omichinski, CRSNG Subvention à la découverte. Structural and functional characterization of protein-metal interactions

Alain Moreau, Fondation Sibylla-Hesse. Étude des déterminants biochimiques, métaboliques et génétiques de l’encéphalomyélite myalgique.

Marlene Oeffinger, ALS Canada-Brain Subvention à la découverte. Proteomic and transcriptomic profiling of paraspeckle function in healthy and ALS model neuronal cells.

Publications 2016-2017

Pilv L, Vermeire E, Rätsep A, Moreau A, Nikolić D, Petek D, Yaman H, Oona M, Kalda R. Development and validation of the short version of the diabetes obstacles questionnaire (DOQ-30) in six European countries. Eur J Gen Pract. 2016; 22(1):16-22.

Trahan C, Aguilar LC, Oeffinger M. Single-Step Affinity Purification (ssAP) and Mass Spectrometry of Macromolecular Complexes in the Yeast S. cerevisiae. Methods Mol Biol. 2016;1361: 265-87.

Robitaille AC, Mariani MK, Fortin A, Grandvaux N. A High Resolution Method to Monitor Phosphorylation-dependent Activation of IRF3. J Vis Exp. 2016 Jan 24;(107).

Moiseeva O, Lopes-Paciencia S, Huot G, Lessard F, Ferbeyre G. Permanent farnesylation of lamin A mutants linked to progeria impairs its phosphorylation at serine 22 during interphase. Aging (Albany NY). 2016 Feb; 8 (2):366-81.

Trahan C, Oeffinger M. Targeted cross-linking-mass spectrometry determines vicinal interactomes within heterogeneous RNP complexes. Nucleic Acids Res. 2016 Feb 18;44(3):1354-69.

Riccio AA, Cingolani G, Pascal JM. PARP-2 domain requirements for DNA damage-dependent activation and localization to sites of DNA damage. Nucleic Acids Res. 2016 Feb 29;44(4):1691-702.

Riahi N, Cappadocia L, Henry O, Omichinski J, De Crescenzo G. Soluble expression, purification and functional characterization of a coil peptide composed of a positively charged and hydrophobic motif. Amino Acids. 2016 Feb; 48(2):567-77.

Shrivastava S, Mansure JJ, Almajed W, Cury F, Ferbeyre G, Popovic  M, Seuntjens J, Kassouf W. The Role of HMGB1 in Radioresistance of Bladder Cancer. Mol Cancer Ther. 2016 Mar; 15 (3):471-9.

Bensidoun P, Raymond P, Oeffinger M, Zenklusen D. Imaging single mRNAs to study dynamics of mRNA export in the yeast Saccharomyces cerevisiae. Methods. 2016 Apr 1;98:104-14.

Visochek L, Grigoryan G, Kalal A, Milshtein-Parush H, Gazit N, Slutsky I, Yeheskel A, Shainberg A, Castiel A, Seger R, Langelier MF, Dantzer F, Pascal JM, Segal M, Cohen-Armon M. A PARP1-ERK2 synergism is required for the induction of LTP. Sci Rep. 2016 Apr 28;6:24950.

Hossain MA, Lalloz A, Benhaddou A, Pagniez F, Raymond M, Le Pape P, Simard P, Théberge K, Leblond J. Econazole imprinted textiles with antifungal activity. Eur J Pharm Biopharm. 2016 Apr; 101:137-44.

Delafosse L, Xu P, Durocher Y. Comparative study of polyethylenimines for transient gene expression in mammalian HEK293 and CHO cells.J Biotechnol. 2016 Jun 10; 227:103-11.

Liu YH, Jin JL, Wang YZ, Tan Y, Zhou YY, Peng T, Li F, Liang WD, Chartrand P, Jiang YY, Shen ZF. Protrusion-localized STAT3 mRNA promotes metastasis of highly metastatic hepatocellular carcinoma cells in vitro. 2016 Jun; 37(6):805-13.  Acta Pharmacol Sin.

Burger G. Non-functional genes repaired at the RNA level..C R Biol. 2016 Jul-Aug; 339(7-8):289-95.

Tocheva EI, Ortega DR, Jensen GJ. Sporulation, bacterial cell envelopes and the origin of life. Nat Rev Microbiol. 2016 Aug;14(8):535-542.

Oeffinger M. Structural biology: Moulding the ribosome. Nature. 2016 Sep 1;537(7618):38-40.

Riccio AA, McCauley M, Langelier MF, Pascal JM. Tankyrase Sterile α Motif Domain Polymerization Is Required for Its Role in Wnt Signaling. Structure. 2016 Sep 6;24(9):1573-81.

Blondeel EJ, Ho R, Schulze S, Sokolenko S, Guillemette SR, Slivac I, Durocher Y, Guillemette JG, McConkey BJ, Chang D, Aucoin MG. An omics approach to rational feed: Enhancing growth in CHO cultures with NMR metabolomics and 2D-DIGE proteomics. J Biotechnol. 2016 Sep 20; 234:127-38.

Luciano L, Granel B, Bernit E, Harle JR, Baumstarck K, Grimaud JC, Bouvier M, Vitton V. Esophageal and anorectal involvement in systemic sclerosis: a systematic assessment with high resolution manometry.Clin Exp Rheumatol. 2016 Sep-Oct;34 Suppl 100(5):63-69.

Scott DD, Oeffinger M. Nucleolin and nucleophosmin: nucleolar proteins with multiple functions in DNA repair. Biochem Cell Biol. 2016 Oct;94(5):419-432.

Eisemann T, McCauley M, Langelier MF, Gupta K, Roy S, Van Duyne GD, Pascal JM.Tankyrase-1 Ankyrin Repeats Form an Adaptable Binding Platform for Targets of ADP-Ribose Modification. Structure. 2016 Oct 4;24 (10):1679-1692.

Jeronimo C, Langelier MF, Bataille AR, Pascal JM, Pugh BF, Robert F. Tail and Kinase Modules Differently Regulate Core Mediator Recruitment and Function In Vivo. Mol Cell. 2016 Nov 3;64(3):455-466.

Steffen JD, McCauley MM, Pascal JM. Fluorescent sensors of PARP-1 structural dynamics and allosteric regulation in response to DNA damage. Nucleic Acids Res. 2016 Nov 16;44(20):9771-9783.

Fernandez-Martinez J, Kim SJ, Shi Y, Upla P, Pellarin R, Gagnon M, Chemmama IE, Wang J, Nudelman I, Zhang W, Williams R, Rice WJ, Stokes DL, Zenklusen D, Chait BT, Sali A, Rout MP. Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform. Cell. 2016 Nov 17; 167(5):1215-1228.

L’honoré A, Commère PH, Ouimette JF, Montarras D, Drouin J, Buckingham M. Redox Regulation by Pitx2 and Pitx3 Is Critical for Fetal Myogenesis. Dev Cell. 2016 Dec 19;39(6):756.

Sheth R, Barozzi I, Langlais D, Osterwalder M, Nemec S, Carlson HL, Stadler HS, Visel A, Drouin J, Kmita M. Distal Limb Patterning Requires Modulation of cis-Regulatory Activities by HOX13.Cell Rep. 2016 Dec 13; 17(11):2913-2926.

Dorion-Thibaudeau J, Durocher Y, De Crescenzo G. Quantification and simultaneous evaluation of the bioactivity of antibody produced in CHO cell culture-The use of the ectodomain of FcγRI and surface plasmon resonance-based biosensor.Mol Immunol. 2016 Dec 21; 82:46-49.

Fritzius T, Turecek R, Seddik R, Kobayashi H, Tiao J, Rem PD, Metz M, Kralikova M, Bouvier M, Gassmann M, Bettler B. KCTD hetero-oligomers confer unique kinetic properties on hippocampal GABAB receptor-induced K+-currents. J Neurosci. 2016 Dec 21. pii: 2181-16.

Lecoq L, Raiola L, Chabot PR, Cyr N, Arseneault G, Legault P, Omichinski JG. Structural characterization of interactions between transactivation domain 1 of the p65 subunit of NF-κB and transcription regulatory factors. Nucleic Acids Res. 2017.

Krahn N, Spearman M, Meier M, Dorion-Thibaudeau J, McDougall M, Patel TR, De Crescenzo G, Durocher Y, Stetefeld J, Butler M. Inhibition of glycosylation on a camelid antibody uniquely affects its FcγRI binding activity. Eur J Pharm Sci. 2017 Jan 1; 96:428-439.

Smart J, Fouillen A, Casu B, Nanci A, Baron C. Cag-delta (Cag3) protein from the Helicobacter pylori 26695 cag type IV secretion system forms ring-like supramolecular assemblies.FEMS Microbiol Lett. 2017 Jan; 364(1).

Wong PC, Seiffert D, Bird JE, Watson CA, Bostwick JS, Giancarli M, Allegretto N, Hua J, Harden D, Guay J, Callejo M, Miller MM, Lawrence RM, Banville J, Guy J, Maxwell BD, Priestley ES, Marinier A, Wexler RR, Bouvier M, Gordon DA, Schumacher WA, Yang J. Blockade of protease-activated receptor-4 (PAR4) provides robust antithrombotic activity with low bleeding.Sci Transl Med. 2017 Jan 4;9(371).

Yousef EM, Furrer D, Laperriere DL, Tahir MR, Mader S, Diorio C, Gaboury LA. MCM2: An alternative to Ki-67 for measuring breast cancer cell proliferation. Mod Pathol 2017 Jan 13.

Wahba HM, Stevenson MJ, Mansour A, Sygusch J, Wilcox DE, Omichinski JG. Structural and biochemical characterization of organotin and organolead compounds binding to the organomercurial lyase MerB provide new insights into its mechanism of carbon-metal bond cleavage.J Am Chem Soc. 2017 Jan 18;139(2):910-921.

Karengera E, Robotham A, Kelly J, Durocher Y, De Crescenzo G, Henry O. Altering the central carbon metabolism of HEK293 cells: Impact on recombinant glycoprotein quality. J Biotechnol. 2017 Jan 20; 242:73-82.

Lefebvre FA, Benoit Bouvrette LP, Bergalet J, Lécuyer E. Biochemical Fractionation of Time-Resolved Drosophila Embryos Reveals Similar Transcriptomic Alterations in Replication Checkpoint and Histone mRNA Processing Mutants. J Mol Biol. 2017 Feb 3.

Gallion J, Koire A, Katsonis P, Schoenegge AM, Bouvier M, Lichtarge O. Predicting phenotype from genotype: improving accuracy through more robust experimental and computational modeling.Hum Mutat. 2017 Feb 23.

Chevrier M, Bobbala D, Villalobos-Hernandez A, Khan MG, Ramanathan S, Saucier C, Ferbeyre G, Geha S, Ilangumaran S. Expression of SOCS1 and the downstream targets of its putative tumor suppressor functions in prostate cancer. BMC Cancer. 2017 Feb 24;17(1):157.

Desrochers G, Cappadocia L, Lussier-Price M, Ton AT, Ayoubi R, Serohijos A, Omichinski JG, Angers A. Molecular Basis of Interactions Between SH3 Domain-Containing Proteins and the Proline-Rich Region of the Ubiquitin Ligase Itch.J Biol Chem. 2017 Feb 24.

Sharifahmadian M, Arya T, Bessette B, Lecoq L, Ruediger E, Omichinski JG, Baron C. Monomer-to-dimer transition of Brucella suis type IV secretion system componentVirB8 induces conformational changes.FEBS J. 2017 Feb 25.

Cahill TJ 3rd, Thomsen AR, Tarrasch JT, Plouffe B, Nguyen AH, Yang F, Huang LY, Kahsai AW, Bassoni DL, Gavino BJ, Lamerdin JE, Triest S, Shukla AK, Berger B, Little J 4th, Antar A, Blanc A, Qu CX, Chen X, Kawakami K, Inoue A, Aoki J, Steyaert J, Sun JP, Bouvier M, Skiniotis G, Lefkowitz RJ. Distinct conformations of GPCR-β-arrestin complexes mediate desensitization, signaling, and endocytosis.Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):2562-2567.

Stallaert W, van der Westhuizen ET, Schonegge AM, Plouffe B, Hogue M, Lukashova V, Inoue A, Ishida S, Aoki J, Le Gouill C, Bouvier M. Purinergic receptor transactivation by the β2-adrenergic receptor increases intracellular Ca2+ in non-excitable cells. Mol Pharmacol. 2017 Mar 9.

Oliazadeh N, Gorman KF, Eveleigh R, Bourque G, Moreau A. Identification of Elongated Primary Cilia with Impaired Mechanotransduction in Idiopathic Scoliosis Patients. Sci Rep. 2017 Mar 14;7:44260.

Sokolina K, Kittanakom S, Snider J, Kotlyar M, Maurice P, Gandía J, Benleulmi-Chaachoua A, Tadagaki K, Oishi A, Wong V, Malty RH, Deineko V, Aoki H, Amin S, Yao Z, Morató X, Otasek D, Kobayashi H, Menendez J, Auerbach D, Angers S, Pržulj N, Bouvier M, Babu M, Ciruela F, Jockers R, Jurisica I, Stagljar I. Systematic protein-protein interaction mapping for clinically relevant human GPCRs. Mol Syst Biol. 2017 Mar 15;13(3):918.

Abd-Rabbo D, Michnick SW. Delineating functional principles of the bow tie structure of a kinase-phosphatase network in the budding yeast. BMC Syst Biol. 2017 Mar 16;11(1):38.

Lefebvre FA, Lécuyer E. Small Luggage for a Long Journey: Transfer of Vesicle-Enclosed Small RNA in Interspecies Communication. Front Microbiol. 2017 Mar 16;8:377.

Racki LR, Tocheva EI, Dieterle MG, Sullivan MC, Jensen GJ, Newman DK. Polyphosphate granule biogenesis is temporally and functionally tied to cell cycle exit during starvation in Pseudomonas aeruginosa. Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):E2440-E2449.

Riahi N, Murschel F, Lerouge S, Durocher Y, Henry O, De Crescenzo G. Bioavailability of immobilized epidermal growth factor: Covalent versus noncovalent grafting. Biointerphases. 2017 Mar 21; 12(1):010501.

Ziarek JJ, Kleist AB, London N, Raveh B, Montpas N, Bonneterre J, St-Onge G, DiCosmo-Ponticello CJ, Koplinski CA, Roy I, Stephens B, Thelen S, Veldkamp CT, Coffman FD, Cohen MC, Dwinell MB, Thelen M, Peterson FC, Heveker N, Volkman BF. Structural basis for chemokine recognition by a G protein-coupled receptor and implications for receptor activation. Sci Signal. 2017 Mar 21; 10 (471).

Reimer KA, Stark MR, Aguilar LC, Stark SR, Burke RD, Moore J, Fahlman RP, Yip CK, Kuroiwa H, Oeffinger M, Rader SD. The sole LSm complex in Cyanidioschyzon merolae associates with pre-mRNA splicing and mRNA degradation factors. RNA. 2017 Mar 21.

Möller D, Banerjee A, Uzuneser TC, Skultety M, Huth T, Plouffe B, Hübner H, Alzheimer C, Friedland K, Müller CP, Bouvier M, Gmeiner P. Discovery of G Protein-Biased Dopaminergics with a Pyrazolo[1,5-a]pyridine Substructure. J Med Chem. 2017 Mar 22.

Madadkar P, Umatheva U, Hale G, Durocher Y, Ghosh R. Ultra-fast separation and analysis of monoclonal antibody aggregates using membrane chromatography. Anal Chem. 2017 Mar 27.

Guinoiseau T, Moreau A, Hohnadel G, Ngo-Giang-Huong N, Brulard C, Vourc’h P, Goudeau A, Gaudy-Graffin C. Deep sequencing is an appropriate tool for the selection of unique Hepatitis C virus (HCV) variants after single genomic amplification. PLoS One. 2017 Mar 31;12 (3):e0174852.

Ramachandran R, Mihara K, Thibeault P, Vanderboor CM, Petri B, Saifeddine M, Bouvier M, Hollenberg MD.Targeting a PAR4 carboxyl terminal motif to regulate platelet function. Mol Pharmacol. 2017 Apr; 91(4):287-295.

Dagenais P, Girard N, Bonneau E, Legault P. Insights into RNA structure and dynamics from recent NMR and X-ray studies of the Neurospora Varkud satellite ribozyme. Wiley Interdiscip Rev RNA. 2017 Apr 6. doi: 10.1002/wrna.1421.

Rahman S, Zorca CE, Traboulsi T, Noutahi E, Krause MR, Mader S, Zenklusen D. Single-cell profiling reveals that eRNA accumulation at enhancer-promoter loops is not required to sustain transcription. Nucleic Acids Res. 2017 Apr 7;45(6):3017-3030.

Oudouhou F, Casu B, Dopgwa Puemi AS, Sygusch J, Baron C. Analysis of novel interactions between components of the selenocysteine biosynthesis pathway SEPHS1, SEPHS2, SEPSECS and SECp43. Biochemistry. 2017 Apr 17. doi: 10.1021/acs.biochem.6b01116.

Beautrait A, Paradis JS, Zimmerman B, Giubilaro J, Nikolajev L, Armando S, Kobayashi H, Yamani L, Namkung Y, Heydenreich FM, Khoury E, Audet M, Roux PP, Veprintsev DB, Laporte SA, Bouvier M. A new inhibitor of the β-arrestin/AP2 endocytic complex reveals interplay between GPCR internalization and signalling. Nat Commun. 2017 Apr 18; 8:15054.

Reimer KA, Stark MR, Aguilar LC, Stark SR, Burke RD, Moore J, Fahlman RP, Yip CK, Kuroiwa H, Oeffinger M, Rader SD. The sole LSm complex in Cyanidioschyzon merolae associates with pre-mRNA splicing and mRNA degradation factors. RNA. 2017 Jun;23(6):952-967.

Milek M, Imami K, Mukherjee N, De Bortoli F, Zinnall U, Hazapis O, Trahan C, Oeffinger M, Heyd F, Ohler U, Selbach M, Landthaler M. DDX54 regulates transcriptome dynamics during DNA damage response. Genome Res. 2017 Jun 8.